Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
total RNA-seq
40
single cell RNA-seq
33
ATAC-seq
32
pCHi-C
16
ChIP-seq
12
Hi-C
Assay category
91
Transcription
33
DNA accessibility
16
DNA binding
12
3D chromatin structure
Target of assay
13
histone
13
histone modification
7
narrow histone mark
6
broad histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
bam
65
tsv
54
bigWig
41
fastq
40
bed narrowPeak
19
zippedFastqFolder
14
bedpe bed3+
12
hic
2
ibed
Organism
184
Homo sapiens
Biosample type
80
tissue
60
primary cell
27
cell line
13
in vitro differentiated cells
4
stem cell
Organ
88
pancreas
41
epithelium
7
heart
5
musculature of body
4
blood vessel
4
vasculature
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
intestine
2
kidney
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
118
AMP
59
HPAP
7
T1D
Genome assembly (visualization)
91
hg19
76
GRCh38
Lab
125
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
BIOSAMPLE
ASSAY
184 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
pCHi-C
ChIP-seq
Hi-C
tissue
islet of Langerhans
21
21
2
1
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
heart right ventricle
1
1
1
+ See 17 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
endothelial cell of umbilical vein
1
cell line
EndoC_BH1
3
3
14
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download