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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
total RNA-seq
84
RNA microarray
32
pCHi-C
27
snATAC-seq
22
ATAC-seq
18
single cell RNA-seq
9
Hi-C
8
ChIP-seq
3
snDrop-seq
Assay category
161
Transcription
49
DNA accessibility
9
3D chromatin structure
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
406
November, 2017
341
May, 2020
338
May, 2021
314
August, 2021
297
February, 2021
295
October, 2019
213
June, 2019
166
August, 2017
148
February, 2023
118
May, 2019
96
May, 2022
94
December, 2017
90
July, 2019
80
April, 2019
80
November, 2018
49
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
22
February, 2020
19
April, 2020
17
October, 2017
14
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2021
7
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
June, 2018
1
October, 2022
1
September, 2018
Available data
179
tsv
170
bam
149
bigWig
89
txt
39
fastq
23
bed narrowPeak
11
bedpe bed3+
9
hic
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
ibed
Organism
346
Homo sapiens
Biosample type
189
tissue
76
cell line
43
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
457
connective tissue
adipose tissue
150
bone element
73
heart
70
blood vessel
70
vasculature
66
artery
pancreas
38
epithelium
10
kidney
8
skeleton
6
limb
6
liver
5
musculature of body
2
brain
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
307
AMP
39
HPAP
Genome assembly (visualization)
183
hg19
166
GRCh38
Lab
307
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
114
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
adipose tissue
pancreas
BIOSAMPLE
ASSAY
346 results
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total RNA-seq
RNA microarray
pCHi-C
snATAC-seq
ATAC-seq
single cell RNA-seq
Hi-C
ChIP-seq
snDrop-seq
tissue
bone element
84
bone tissue
58
kidney
5
psoas muscle
2
1
2
liver
1
1
1
1
+ See 27 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
MCF-7
1
+ See 3 more…
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
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