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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ATAC-seq
20
total RNA-seq
13
ChIP-seq
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
33
DNA accessibility
24
Transcription
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
4
March, 2023
4
October, 2022
3
June, 2018
1
August, 2022
Available data
59
bam
38
bigWig
37
bed narrowPeak
20
tsv
7
fastq
2
bedpe bed3+
2
hic
Organism
68
Homo sapiens
Biosample type
40
tissue
18
cell line
7
primary cell
5
in vitro differentiated cells
2
stem cell
Organ
62
pancreas
23
epithelium
1
adipose tissue
1
connective tissue
Project
61
AMP
7
HPAP
4
community
Genome assembly (visualization)
64
GRCh38
59
hg19
Lab
61
AMP-T2D consortium
7
Klaus Kaestner, Upenn
4
Anna Gloyn, Oxford
ITG
Audit category:
22
inconsistent ontology term
lab.title!
ITG
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
EndoC-BH1
1
1
primary cell
pancreatic alpha cell
5
pancreatic beta cell
2
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
stem cell
SB Ad3.1
1
1
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