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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
10
MeRIP-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
31
DNA accessibility
22
Transcription
6
DNA methylation
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
40
May, 2024
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
563
tsv
556
bigWig
89
txt
45
fastq
25
bed narrowPeak
8
tagAlign
6
csv
4
bed bedgraph
3
bed bed3+
2
bed bed3
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
154
Homo sapiens
Biosample type
97
tissue
46
primary cell
9
cell line
4
in vitro differentiated cells
2
stem cell
Organ
84
bone element
16
pancreas
12
epithelium
8
kidney
4
connective tissue
2
liver
Project
108
AMP
45
HPAP
4
community
1
ITG
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
98
AMP-T2D consortium
45
Klaus Kaestner, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
1
ITG
Audit category:
90
inconsistent ontology term
32
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
158 results
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Clear Filters
RNA microarray
snATAC-seq
single cell RNA-seq
MeRIP-seq
WGBS
ATAC-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
bone element
84
kidney
5
islet of Langerhans
4
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 2 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
chondrocytes
1
cell line
EndoC_BH1
6
EndoC-BH1
1
1
HepG2
1
in vitro differentiated cells
adipocyte
4
stem cell
SB Ad3.1
1
1
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