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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
50
ChIP-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
194
Transcription
100
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
223
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
283
bam
260
bigWig
189
tsv
50
tagAlign
27
bed narrowPeak
1
hic
Organism
342
Homo sapiens
Biosample type
193
tissue
148
primary cell
3
cell line
2
stem cell
Organ
194
liver
Project
296
AMP
45
T1D
4
community
1
ITG
Genome assembly (visualization)
260
hg19
208
GRCh38
Lab
296
AMP-T2D consortium
45
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
346 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
143
50
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC-BH1
1
1
HepG2
1
stem cell
SB Ad3.1
1
1
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