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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
snATAC-seq
3
ATAC-seq
2
DNase-seq
1
RRBS
Assay category
58
DNA binding
13
DNA accessibility
1
DNA methylation
Target of assay
41
histone
41
histone modification
23
narrow histone mark
18
broad histone mark
14
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
63
bam
58
fastq
50
bigWig
37
bed narrowPeak
23
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tagAlign
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
407
tissue
72
primary cell
68
in vitro differentiated cells
Organ
41
pancreas
34
epithelium
8
blood
8
bodily fluid
5
kidney
Project
64
AMP
8
T1D
Genome assembly (visualization)
51
hg19
46
GRCh38
Lab
64
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
72 results
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ChIP-seq
snATAC-seq
ATAC-seq
DNase-seq
RRBS
primary cell
skeletal muscle myoblast
15
2
1
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
peripheral blood mononuclear cell
8
kidney epithelial cell
5
pancreatic acinar cell
1
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