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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
48
single cell RNA-seq
47
total RNA-seq
3
Hi-C
Assay category
100
DNA accessibility
95
Transcription
3
3D chromatin structure
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
31
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
138
bam
138
bigWig
93
tsv
48
fastq
3
bedpe bed3+
3
cool
3
hic
Organism
198
Homo sapiens
Biosample type
313
tissue
198
primary cell
2
cell line
Organ
40
pancreas
36
epithelium
2
connective tissue
Project
150
AMP
45
T1D
3
HPAP
Genome assembly (visualization)
141
hg19
93
GRCh38
Lab
150
AMP-T2D consortium
45
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
14
inconsistent ontology term
3
audit script error
BIOSAMPLE
ASSAY
198 results
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Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
Hi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
1
pancreatic alpha cell
7
1
pancreatic acinar cell
5
1
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
T-helper 17 cell
2
2
T-helper 2 cell
2
2
central memory CD8-positive, alpha-beta T cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
effector memory CD8-positive, alpha-beta T cell
2
2
gamma-delta T cell
2
2
mature natural killer cell
2
2
memory B cell
2
2
memory T cell
2
2
memory regulatory T cell
2
2
monocyte
2
2
naive B cel
2
2
naive regulatory T cell
2
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
2
pancreatic delta cell
4
regulatory T cell
2
2
pancreatic cell
3
pancreatic ductal cell
3
pancreatic polypeptide-secreting cell
3
co-expressing pancreatic endocrine cell
2
endothelial cell
2
immature natural killer cell
1
1
mast cell
2
myeloid dendritic cell
1
1
natural killer cell
1
1
pancreatic epsilon cell
2
pancreatic stellate cell
2
plasma cell
1
1
plasmacytoid dendritic cell
1
1
unclassified pancreatic endocrine cell
2
mesenchymal cell
1
neutrophil
1
unclassified exocrine cell
1
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