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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
22
total RNA-seq
16
ATAC-seq
4
DNase-seq
4
pCHi-C
1
Hi-C
Assay category
310
DNA binding
22
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
257
histone
257
histone modification
162
narrow histone mark
95
broad histone mark
49
control
4
RNA binding protein
4
transcription factor
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
301
bam
253
bigWig
244
bed narrowPeak
140
bigBed narrowPeak
49
tagAlign
8
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bedpe bed3+
1
hic
1
tagAlign bed3+
Organism
357
Homo sapiens
Biosample type
357
tissue
39
primary cell
30
cell line
8
in vitro differentiated cells
Organ
114
brain
76
blood vessel
76
limb
76
vasculature
42
nerve
31
artery
29
heart
21
eye
7
musculature of body
6
liver
5
pancreas
4
gonad
4
kidney
4
ovary
2
connective tissue
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
357
AMP
Genome assembly (visualization)
256
hg19
253
GRCh38
Lab
357
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
357 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
ascending aorta
16
thoracic aorta
16
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