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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
129
DNA binding
10
DNA accessibility
Target of assay
122
histone
122
histone modification
76
broad histone mark
46
narrow histone mark
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
402
bam
369
bigWig
287
fastq
239
bed narrowPeak
139
bigBed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
133
Homo sapiens
Biosample type
115
tissue
23
primary cell
1
in vitro differentiated cells
Organ
39
blood vessel
39
vasculature
25
brain
18
pancreas
15
heart
7
epithelium
6
limb
6
liver
6
musculature of body
4
kidney
3
artery
3
connective tissue
2
adipose tissue
Project
139
AMP
Genome assembly (visualization)
139
hg19
134
GRCh38
Lab
139
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
ascending aorta
13
temporal lobe
13
angular gyrus
12
pancreas
12
thoracic aorta
12
+ See 12 more…
primary cell
skeletal muscle myoblast
14
2
kidney epithelial cell
4
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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