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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
161
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
73
total RNA-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
179
Transcription
161
DNA binding
82
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
111
histone
111
histone modification
67
broad histone mark
44
narrow histone mark
34
control
16
transcription factor
6
RNA binding protein
Date released
683
February, 2021
406
November, 2017
341
May, 2020
338
May, 2021
315
August, 2021
296
October, 2019
August, 2017
214
June, 2019
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
202
bed narrowPeak
167
bam
143
bigWig
122
tsv
96
bigBed narrowPeak
64
xls
57
txt
24
tagAlign
5
bed bed3+
2
hic
1
bedpe bed3+
1
vcf
Organism
432
Homo sapiens
Biosample type
340
tissue
42
cell line
42
in vitro differentiated cells
9
primary cell
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
35
liver
28
brain
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
pancreas
5
connective tissue
1
adipose tissue
Project
433
AMP
Genome assembly (visualization)
200
GRCh38
156
hg19
Lab
267
AMP-T2D consortium
128
Katalin Susztak, Upenn
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
4
inconsistent ontology term
month_released!
August, 2017
organ_slims!
pancreas
BIOSAMPLE
ASSAY
433 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 18 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
kidney epithelial cell
5
hepatocyte
4
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