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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
301
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
301
DNA binding
89
Transcription
10
DNA accessibility
Target of assay
195
histone modification
194
histone
107
broad histone mark
86
narrow histone mark
54
control
52
transcription factor
13
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
280
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
80
November, 2018
79
April, 2019
76
October, 2018
74
July, 2019
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
402
bam
369
bigWig
287
fastq
239
bed narrowPeak
139
bigBed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
bed bedMethyl
6
bigBed bedMethyl
Organism
393
Homo sapiens
Biosample type
283
tissue
63
primary cell
54
in vitro differentiated cells
Organ
170
pancreas
69
connective tissue
50
blood vessel
50
vasculature
34
epithelium
28
brain
26
liver
21
heart
15
adipose tissue
7
limb
7
musculature of body
5
artery
5
kidney
Project
400
AMP
Genome assembly (visualization)
349
hg19
343
GRCh38
Lab
400
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
400 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 13 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
kidney epithelial cell
5
+ See 1 more…
in vitro differentiated cells
adipocyte
53
1
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