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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
375
ChIP-seq
91
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
375
DNA binding
91
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
225
histone modification
224
histone
126
broad histone mark
97
narrow histone mark
83
control
67
transcription factor
24
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
478
bam
416
bigWig
347
fastq
284
bed narrowPeak
184
bigBed narrowPeak
91
tsv
85
tagAlign
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
471
Homo sapiens
Biosample type
359
tissue
65
primary cell
54
in vitro differentiated cells
Organ
223
pancreas
94
connective tissue
50
blood vessel
50
vasculature
40
adipose tissue
36
epithelium
28
brain
26
liver
21
heart
7
limb
7
musculature of body
5
artery
5
kidney
Project
478
AMP
Genome assembly (visualization)
396
hg19
392
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
17
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
478 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
body of pancreas
35
liver
25
ascending aorta
16
endocrine pancreas
16
+ See 15 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
kidney epithelial cell
5
+ See 1 more…
in vitro differentiated cells
adipocyte
53
1
See all biosamples
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