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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
26
total RNA-seq
22
ATAC-seq
4
single cell RNA-seq
1
pCHi-C
Assay category
167
DNA binding
30
Transcription
22
DNA accessibility
Target of assay
136
histone
136
histone modification
85
broad histone mark
51
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
210
bam
186
bigWig
155
bed narrowPeak
117
bigBed narrowPeak
94
fastq
29
tsv
14
tagAlign
4
bed broadPeak
1
bedpe bed3+
1
csv
Organism
220
Homo sapiens
Biosample type
138
tissue
81
primary cell
1
in vitro differentiated cells
Organ
82
pancreas
69
epithelium
50
blood vessel
50
vasculature
44
brain
21
heart
7
limb
7
musculature of body
5
artery
5
kidney
2
adipose tissue
2
connective tissue
1
spleen
Project
220
AMP
Genome assembly (visualization)
185
GRCh38
185
hg19
Lab
219
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
3
inconsistent ontology term
Audit category:
36
missing controlled_by
BIOSAMPLE
ASSAY
220 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
tissue
ascending aorta
16
thoracic aorta
16
brain
15
temporal lobe
15
angular gyrus
13
+ See 11 more…
primary cell
pancreatic ductal cell
13
4
4
pancreatic alpha cell
10
3
2
pancreatic acinar cell
8
2
3
1
pancreatic beta cell
10
4
pancreatic endocrine cell
11
+ See 2 more…
in vitro differentiated cells
white fat cell
1
See all biosamples
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