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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
8
DNase-seq
7
WGBS
4
single cell RNA-seq
1
FAIRE-seq
Assay category
190
DNA binding
9
DNA accessibility
7
DNA methylation
4
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
209
bam
179
bigWig
169
bed narrowPeak
169
bigBed narrowPeak
90
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
tsv
1
csv
Organism
210
Homo sapiens
Biosample type
140
tissue
61
cell line
9
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
12
pancreas
9
spleen
8
epithelium
7
limb
7
musculature of body
5
artery
5
kidney
2
adipose tissue
connective tissue
Project
210
AMP
Genome assembly (visualization)
177
GRCh38
170
hg19
Lab
210
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 11 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic alpha cell
2
pancreatic acinar cell
1
pancreatic cell
1
See all biosamples
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