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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
139
DNA binding
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
96
histone
96
histone modification
60
broad histone mark
36
narrow histone mark
27
control
16
transcription factor
6
RNA binding protein
Date released
707
February, 2021
328
November, 2017
326
August, 2017
309
May, 2021
295
August, 2021
291
May, 2020
265
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
9
October, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
203
bed narrowPeak
169
bam
144
bigWig
123
tsv
97
bigBed narrowPeak
64
xls
57
txt
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
414
Homo sapiens
Biosample type
344
tissue
44
cell line
22
in vitro differentiated cells
5
primary cell
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
31
liver
28
brain
8
embryo
7
artery
7
epithelium
7
limb
7
musculature of body
6
pancreas
5
connective tissue
1
adipose tissue
Project
415
AMP
Genome assembly (visualization)
185
GRCh38
142
hg19
Lab
247
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
415 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
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cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
1
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
kidney epithelial cell
5
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