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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
76
ATAC-seq
74
total RNA-seq
14
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
142
DNA binding
88
Transcription
82
DNA accessibility
3
3D chromatin structure
1
DNA sequencing
Target of assay
99
histone
99
histone modification
60
broad histone mark
39
narrow histone mark
29
control
14
transcription factor
4
RNA binding protein
Date released
649
February, 2021
411
August, 2017
406
November, 2017
396
May, 2021
341
May, 2020
306
October, 2019
227
August, 2021
200
May, 2022
183
June, 2019
169
February, 2023
168
July, 2018
99
May, 2019
94
December, 2017
88
November, 2018
83
July, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
57
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
188
bed narrowPeak
148
bam
129
bigWig
82
bigBed narrowPeak
64
xls
57
txt
31
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
325
Homo sapiens
Biosample type
231
tissue
44
cell line
42
in vitro differentiated cells
9
primary cell
Organ
135
kidney
heart
56
blood vessel
56
vasculature
35
liver
28
brain
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
5
connective tissue
1
adipose tissue
Project
326
AMP
Genome assembly (visualization)
186
GRCh38
142
hg19
Lab
158
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
326 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
13
4
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 7 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
kidney epithelial cell
5
hepatocyte
4
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