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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
4
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
197
DNA binding
180
Transcription
82
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
112
histone
112
histone modification
67
broad histone mark
45
narrow histone mark
44
transcription factor
39
control
8
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
233
bed narrowPeak
203
bam
174
bigWig
127
bigBed narrowPeak
123
tsv
64
xls
57
txt
35
fastq
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
473
Homo sapiens
Biosample type
351
tissue
72
cell line
42
in vitro differentiated cells
9
primary cell
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
36
liver
28
brain
27
blood
27
bodily fluid
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
7
spleen
6
pancreas
5
connective tissue
1
adipose tissue
Project
474
AMP
Genome assembly (visualization)
231
GRCh38
187
hg19
Lab
306
AMP-T2D consortium
128
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
474 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 21 more…
cell line
HepG2
18
9
2
2
1
GM12878
27
H1-hESC
8
EndoC_BH1
2
HEK293T
2
+ See 1 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
primary cell
kidney epithelial cell
5
hepatocyte
4
See all biosamples
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