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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
ChIP-seq
15
total RNA-seq
1
Hi-C
Assay category
178
DNA binding
15
Transcription
1
3D chromatin structure
Target of assay
108
histone
108
histone modification
66
broad histone mark
42
narrow histone mark
35
control
33
transcription factor
7
RNA binding protein
2
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
193
bam
158
bigWig
143
bed narrowPeak
127
bigBed narrowPeak
74
fastq
15
tsv
Organism
194
Homo sapiens
Biosample type
122
tissue
39
in vitro differentiated cells
28
cell line
5
primary cell
Organ
50
blood vessel
50
vasculature
28
brain
27
blood
27
bodily fluid
21
heart
13
embryo
7
limb
7
musculature of body
7
spleen
5
artery
5
epithelium
5
kidney
2
pancreas
1
liver
Project
194
AMP
Genome assembly (visualization)
158
hg19
157
GRCh38
Lab
194
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
2
inconsistent control read length
BIOSAMPLE
ASSAY
194 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 7 more…
in vitro differentiated cells
pancreatic endoderm
9
4
definitive endodermal cell
3
2
embryonic stem cell
3
2
endocrine cell
3
2
posterior foregut
3
2
+ See 2 more…
cell line
GM12878
27
HepG2
1
primary cell
kidney epithelial cell
5
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