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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
1
Hi-C
Assay category
560
DNA binding
56
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
277
transcription factor
180
histone
180
histone modification
108
broad histone mark
98
control
72
narrow histone mark
66
recombinant protein
44
RNA binding protein
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
546
bam
464
bigWig
440
bed narrowPeak
439
bigBed narrowPeak
400
fastq
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
19
zippedFastqFolder
3
tar
Organism
620
Homo sapiens
Biosample type
343
cell line
204
tissue
73
primary cell
Organ
316
liver
119
brain
56
vasculature
53
blood vessel
30
epithelium
27
blood
27
bodily fluid
21
heart
21
pancreas
7
limb
7
musculature of body
7
spleen
5
artery
5
kidney
Project
561
AMP
59
HPAP
Genome assembly (visualization)
409
GRCh38
408
hg19
Lab
561
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
620 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
Hi-C
cell line
HepG2
315
1
GM12878
27
tissue
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
substantia nigra
15
+ See 13 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
kidney epithelial cell
5
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
+ See 2 more…
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