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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
224
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
224
DNA binding
10
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
97
transcription factor
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
33
control
28
RNA binding protein
16
recombinant protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
241
bam
207
bigWig
200
bed narrowPeak
200
bigBed narrowPeak
123
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
243
Homo sapiens
Biosample type
148
tissue
89
cell line
6
primary cell
Organ
54
liver
50
blood vessel
50
vasculature
42
blood
42
bodily fluid
30
brain
21
heart
16
spleen
9
pancreas
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
243
AMP
Genome assembly (visualization)
205
GRCh38
198
hg19
Lab
243
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
ascending aorta
16
spleen
13
1
2
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 12 more…
cell line
HepG2
45
1
1
GM12878
42
primary cell
kidney epithelial cell
5
pancreatic cell
1
See all biosamples
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