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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
total RNA-seq
128
ChIP-seq
27
snATAC-seq
18
single cell RNA-seq
14
ATAC-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
505
Transcription
128
DNA binding
41
DNA accessibility
6
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
10
transcription factor
5
RNA binding protein
Date released
565
February, 2021
411
August, 2017
406
November, 2017
398
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
200
May, 2022
197
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
626
bam
590
bigWig
501
tsv
112
bed narrowPeak
97
bigBed narrowPeak
45
fastq
8
tagAlign
6
csv
5
txt
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
685
Homo sapiens
Biosample type
510
tissue
96
cell line
53
primary cell
26
in vitro differentiated cells
Organ
455
connective tissue
386
adipose tissue
bone element
116
blood vessel
116
vasculature
87
heart
71
artery
37
epithelium
34
pancreas
28
brain
13
kidney
13
limb
8
skeleton
7
musculature of body
3
liver
Project
640
AMP
45
HPAP
Genome assembly (visualization)
605
hg19
598
GRCh38
Lab
640
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
47
inconsistent ontology term
32
audit script error
1
inconsistent replicate
organ_slims!
bone element
BIOSAMPLE
ASSAY
685 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
kidney epithelial cell
5
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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