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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
115
ChIP-seq
48
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
172
Transcription
115
DNA binding
1
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
23
control
RNA binding protein
5
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
279
bam
256
bigWig
164
tsv
92
bed narrowPeak
92
bigBed narrowPeak
50
fastq
1
hic
Organism
284
Homo sapiens
Biosample type
231
tissue
53
primary cell
2
cell line
2
stem cell
Organ
159
pancreas
47
blood vessel
47
vasculature
37
epithelium
28
brain
19
heart
7
limb
7
musculature of body
4
artery
4
kidney
2
connective tissue
Project
283
AMP
4
community
1
ITG
Genome assembly (visualization)
256
GRCh38
256
hg19
Lab
283
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
8
inconsistent ontology term
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
288 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
120
ascending aorta
15
temporal lobe
15
thoracic aorta
15
angular gyrus
13
+ See 7 more…
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
kidney epithelial cell
4
pancreatic delta cell
4
+ See 12 more…
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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