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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
40
total RNA-seq
15
small RNA-seq
14
RRBS
11
WGBS
7
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
120
DNA binding
58
Transcription
25
DNA methylation
8
DNA accessibility
7
3D chromatin structure
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
Date released
712
February, 2021
399
May, 2021
357
August, 2017
307
October, 2019
284
August, 2021
216
June, 2019
205
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
61
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
November, 2018
34
December, 2018
31
December, 2017
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
195
bam
174
bigWig
104
bed narrowPeak
99
bigBed narrowPeak
58
tsv
22
bed bedMethyl
22
bigBed bedMethyl
3
bed bed3+
3
hdf5
Organism
218
Homo sapiens
Biosample type
184
tissue
34
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
18
connective tissue
18
epithelium
17
musculature of body
16
kidney
12
adipose tissue
12
limb
liver
8
artery
8
pancreas
2
pericardium
1
eye
Project
218
AMP
Genome assembly (visualization)
179
hg19
168
GRCh38
Lab
218
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
thoracic aorta
16
2
1
ascending aorta
16
1
temporal lobe
15
1
1
aorta
13
2
angular gyrus
13
+ See 26 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 18 more…
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