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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
4
small RNA-seq
4
total RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
28
DNA binding
11
Transcription
3
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
25
histone
25
histone modification
15
broad histone mark
10
narrow histone mark
6
control
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
41
bam
41
bigWig
26
bed narrowPeak
26
bigBed narrowPeak
11
tsv
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
46
Homo sapiens
Biosample type
39
tissue
7
primary cell
Organ
62
vasculature
61
blood vessel
46
brain
46
heart
18
connective tissue
18
epithelium
17
musculature of body
16
kidney
12
adipose tissue
12
limb
10
liver
8
artery
8
pancreas
2
pericardium
1
eye
Project
46
AMP
Genome assembly (visualization)
42
hg19
37
GRCh38
Lab
46
AMP-T2D consortium
BIOSAMPLE
ASSAY
46 results
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ChIP-seq
small RNA-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
temporal lobe
15
1
1
angular gyrus
13
frontal cortex
1
1
1
diencephalon
1
1
brain
1
+ See 3 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 1 more…
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