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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
32
pCHi-C
19
total RNA-seq
10
Hi-C
10
MeRIP-seq
5
ATAC-seq
1
DNase-seq
Assay category
123
DNA binding
19
Transcription
10
3D chromatin structure
6
DNA accessibility
Target of assay
95
histone
95
histone modification
58
broad histone mark
37
narrow histone mark
28
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
142
bam
122
bigWig
102
bed narrowPeak
98
bigBed narrowPeak
49
tsv
12
bedpe bed3+
10
hic
2
ibed
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
200
Homo sapiens
Biosample type
159
tissue
17
cell line
12
primary cell
8
in vitro differentiated cells
4
stem cell
Organ
54
blood vessel
54
vasculature
30
brain
28
heart
26
pancreas
17
epithelium
12
musculature of body
8
connective tissue
7
kidney
7
limb
5
artery
3
liver
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
193
AMP
7
T1D
Genome assembly (visualization)
135
hg19
118
GRCh38
Lab
190
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
26
inconsistent ontology term
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ChIP-seq
pCHi-C
total RNA-seq
Hi-C
MeRIP-seq
ATAC-seq
DNase-seq
tissue
aorta
13
1
1
1
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
+ See 25 more…
cell line
EndoC_BH1
1
2
6
2
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
+ See 1 more…
primary cell
osteoblast
4
1
1
kidney epithelial cell
5
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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