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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
173
ChIP-seq
104
ATAC-seq
33
pCHi-C
10
Hi-C
Assay category
205
Transcription
173
DNA binding
104
DNA accessibility
10
3D chromatin structure
Target of assay
122
histone
122
histone modification
64
narrow histone mark
58
broad histone mark
46
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
419
bam
377
bigWig
234
tsv
127
bed narrowPeak
97
bigBed narrowPeak
50
tagAlign
12
bedpe bed3+
10
hic
2
ibed
Organism
525
Homo sapiens
Biosample type
348
tissue
153
primary cell
12
cell line
8
in vitro differentiated cells
4
stem cell
Organ
197
liver
54
blood vessel
54
vasculature
30
brain
28
heart
16
pancreas
12
musculature of body
11
epithelium
7
kidney
7
limb
5
artery
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
473
AMP
52
T1D
Genome assembly (visualization)
389
hg19
319
GRCh38
Lab
480
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
28
inconsistent ontology term
BIOSAMPLE
ASSAY
525 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Hi-C
tissue
liver
144
50
1
1
aorta
1
13
1
1
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 25 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
5
B cell
2
2
+ See 26 more…
cell line
EndoC_BH1
2
1
2
early embryonic cell
2
HepG2
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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