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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
576
ChIP-seq
190
total RNA-seq
100
ATAC-seq
1
pCHi-C
Assay category
576
DNA binding
190
Transcription
100
DNA accessibility
Target of assay
249
transcription factor
207
histone
207
histone modification
117
control
108
broad histone mark
99
narrow histone mark
66
recombinant protein
42
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
795
bam
691
bigWig
437
bed narrowPeak
409
bigBed narrowPeak
324
fastq
189
tsv
128
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
867
Homo sapiens
Biosample type
390
tissue
316
cell line
161
primary cell
Organ
509
liver
119
brain
56
vasculature
53
blood vessel
21
heart
11
epithelium
7
limb
7
musculature of body
5
artery
5
kidney
2
pancreas
Project
822
AMP
45
T1D
Genome assembly (visualization)
638
hg19
583
GRCh38
Lab
822
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
867 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
tissue
liver
50
143
layer of hippocampus
22
ascending aorta
16
thoracic aorta
16
caudate nucleus
15
+ See 13 more…
cell line
HepG2
315
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
5
B cell
2
2
+ See 28 more…
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