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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
78
ATAC-seq
41
WGBS
34
single cell RNA-seq
30
total RNA-seq
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
120
DNA binding
101
DNA accessibility
64
Transcription
41
DNA methylation
Target of assay
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
28
control
5
RNA binding protein
5
nucleotide modification
5
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
150
bam
137
bed narrowPeak
134
zippedFastqFolder
122
bigWig
98
bigBed narrowPeak
24
fastq
7
txt
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
336
Homo sapiens
Biosample type
185
tissue
145
primary cell
6
cell line
Organ
116
pancreas
91
epithelium
50
blood vessel
50
vasculature
40
liver
28
brain
21
heart
9
musculature of body
7
limb
6
connective tissue
5
artery
5
kidney
Project
202
AMP
134
HPAP
Genome assembly (visualization)
142
hg19
102
GRCh38
Lab
134
Klaus Kaestner, Upenn
128
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
9
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
336 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
tissue
liver
20
20
islet of Langerhans
18
6
4
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 9 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
osteoblast
1
4
1
kidney epithelial cell
5
+ See 1 more…
cell line
EndoC_BH1
6
See all biosamples
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