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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
77
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
92
DNA binding
60
Transcription
41
DNA methylation
Target of assay
67
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
20
control
5
RNA binding protein
5
transcription factor
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
116
bam
110
bed narrowPeak
92
bigWig
72
bigBed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
292
Homo sapiens
Biosample type
153
tissue
139
primary cell
Organ
106
pancreas
85
epithelium
50
blood vessel
50
vasculature
40
liver
brain
21
heart
9
musculature of body
7
limb
5
artery
5
kidney
Project
158
AMP
134
HPAP
Genome assembly (visualization)
111
hg19
71
GRCh38
Lab
134
Klaus Kaestner, Upenn
94
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
1
audit script error
organ_slims!
brain
BIOSAMPLE
ASSAY
292 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
tissue
liver
20
20
islet of Langerhans
18
6
ascending aorta
16
thoracic aorta
16
aorta
13
+ See 7 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
kidney epithelial cell
5
pancreatic acinar cell
4
See all biosamples
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