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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
46
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
194
DNA binding
67
Transcription
27
DNA methylation
8
3D chromatin structure
8
DNA accessibility
Target of assay
122
histone
122
histone modification
77
broad histone mark
55
control
45
narrow histone mark
20
transcription factor
16
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
278
bam
229
bigWig
149
bed narrowPeak
144
bigBed narrowPeak
67
tsv
60
fastq
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
304
Homo sapiens
Biosample type
266
tissue
38
primary cell
Organ
62
vasculature
61
blood vessel
61
pancreas
46
brain
46
heart
41
connective tissue
35
adipose tissue
20
epithelium
17
musculature of body
16
kidney
12
limb
10
liver
8
artery
2
pericardium
1
eye
Project
304
AMP
Genome assembly (visualization)
235
hg19
222
GRCh38
Lab
304
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
body of pancreas
35
2
2
thoracic aorta
16
2
1
ascending aorta
16
1
subcutaneous adipose tissue
12
4
1
temporal lobe
15
1
1
+ See 29 more…
primary cell
kidney epithelial cell
5
1
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
mesenchymal stem cell of adipose
1
1
pancreatic acinar cell
2
+ See 21 more…
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