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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
5
total RNA-seq
4
ATAC-seq
2
Hi-C
Assay category
15
DNA binding
5
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
8
transcription factor
7
recombinant protein
4
control
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
24
bam
16
bigWig
15
bed narrowPeak
5
tsv
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
26
Homo sapiens
Biosample type
13
cell line
6
in vitro differentiated cells
5
primary cell
2
tissue
Organ
16
kidney
4
epithelium
2
brain
1
liver
Project
26
AMP
Genome assembly (visualization)
22
hg19
20
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
primary cell
kidney epithelial cell
3
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
tissue
brodmann area 43
1
insular gyrus
1
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