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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
280
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
182
histone modification
181
histone
100
broad histone mark
80
narrow histone mark
50
transcription factor
48
control
11
RNA binding protein
3
chromatin remodeller
Date released
506
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
274
May, 2021
243
October, 2019
183
June, 2019
164
July, 2018
99
May, 2019
94
December, 2017
87
November, 2018
76
October, 2018
72
September, 2018
61
July, 2019
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
23
April, 2019
15
October, 2017
14
March, 2020
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
381
bam
354
bigWig
287
fastq
224
bed narrowPeak
124
bigBed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
374
Homo sapiens
Biosample type
264
tissue
63
primary cell
54
in vitro differentiated cells
Organ
170
pancreas
71
connective tissue
50
blood vessel
50
vasculature
34
epithelium
28
brain
26
liver
heart
17
adipose tissue
7
limb
7
musculature of body
5
artery
5
kidney
Project
381
AMP
Genome assembly (visualization)
334
hg19
330
GRCh38
Lab
381
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
heart
BIOSAMPLE
ASSAY
381 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
ascending aorta
16
thoracic aorta
16
temporal lobe
15
+ See 10 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
kidney epithelial cell
5
+ See 1 more…
in vitro differentiated cells
adipocyte
53
1
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