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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
49
total RNA-seq
8
single cell RNA-seq
6
snATAC-seq
5
ChIP-seq
2
STARR-seq
1
Hi-C
Assay category
70
DNA accessibility
57
Transcription
5
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
broad histone mark
1
RNA binding protein
1
control
1
narrow histone mark
1
transcription factor
Date released
130
August, 2021
81
June, 2019
47
September, 2023
30
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
2
March, 2020
Available data
68
bed narrowPeak
64
xls
57
txt
5
bam
4
bigBed narrowPeak
4
bigWig
1
hic
Organism
135
Homo sapiens
Biosample type
128
tissue
5
primary cell
2
cell line
Organ
135
kidney
113
heart
56
blood vessel
56
vasculature
35
liver
28
brain
11
epithelium
8
embryo
7
artery
7
limb
7
musculature of body
6
pancreas
5
connective tissue
1
adipose tissue
Project
135
AMP
Genome assembly (visualization)
68
GRCh38
5
hg19
Lab
128
Katalin Susztak, Upenn
5
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
135 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
ChIP-seq
STARR-seq
Hi-C
tissue
kidney
64
49
8
6
1
primary cell
kidney epithelial cell
5
cell line
HEK293T
2
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