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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
191
DNA binding
10
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
97
transcription factor
92
histone
92
histone modification
58
broad histone mark
34
narrow histone mark
control
28
RNA binding protein
16
recombinant protein
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
712
February, 2021
390
May, 2021
361
August, 2017
335
November, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
208
bam
207
bigWig
200
bed narrowPeak
200
bigBed narrowPeak
113
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
210
Homo sapiens
Biosample type
119
tissue
86
cell line
5
primary cell
Organ
54
liver
39
blood
39
blood vessel
39
bodily fluid
39
vasculature
27
brain
15
heart
9
spleen
8
pancreas
6
limb
6
musculature of body
4
epithelium
4
kidney
3
artery
1
adipose tissue
1
connective tissue
Project
210
AMP
Genome assembly (visualization)
205
GRCh38
198
hg19
Lab
210
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
control
BIOSAMPLE
ASSAY
210 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
ascending aorta
13
temporal lobe
13
angular gyrus
12
thoracic aorta
12
aorta
11
+ See 12 more…
cell line
HepG2
45
1
1
GM12878
39
primary cell
kidney epithelial cell
4
pancreatic cell
1
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