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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
total RNA-seq
100
ATAC-seq
48
single cell RNA-seq
16
snATAC-seq
1
pCHi-C
Assay category
358
Transcription
116
DNA accessibility
DNA binding
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
397
bam
397
bigWig
353
tsv
50
fastq
Organism
475
Homo sapiens
Biosample type
271
tissue
203
primary cell
1
cell line
Organ
165
pancreas
144
liver
33
epithelium
8
blood
8
bodily fluid
2
connective tissue
Project
414
AMP
61
T1D
Genome assembly (visualization)
397
hg19
352
GRCh38
Lab
414
AMP-T2D consortium
61
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
475 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
tissue
liver
143
islet of Langerhans
120
4
pancreas
4
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
peripheral blood mononuclear cell
8
+ See 40 more…
cell line
HepG2
1
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