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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
177
ATAC-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
1
pCHi-C
Assay category
250
Transcription
199
DNA accessibility
DNA binding
41
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
257
bam
253
bigWig
189
tsv
134
zippedFastqFolder
38
bed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
491
Homo sapiens
Biosample type
281
primary cell
209
tissue
1
cell line
Organ
184
liver
104
pancreas
80
epithelium
2
musculature of body
Project
312
AMP
134
HPAP
45
T1D
Genome assembly (visualization)
272
hg19
188
GRCh38
Lab
248
AMP-T2D consortium
134
Klaus Kaestner, Upenn
69
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
491 results
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total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
+ See 28 more…
tissue
liver
163
20
islet of Langerhans
6
18
skeletal muscle tissue
1
1
cell line
HepG2
1
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