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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
total RNA-seq
138
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
172
Transcription
139
DNA accessibility
DNA binding
Date released
662
February, 2021
276
August, 2021
246
May, 2020
187
June, 2019
168
July, 2018
166
May, 2021
115
August, 2017
108
July, 2019
106
February, 2023
72
October, 2019
66
May, 2022
57
March, 2020
49
April, 2018
48
November, 2019
41
September, 2018
25
February, 2020
18
November, 2018
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
5
January, 2019
5
March, 2019
5
September, 2017
4
August, 2018
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
1
October, 2022
Available data
212
bam
208
bigWig
144
tsv
38
bed narrowPeak
24
fastq
7
txt
1
bed bed3+
Organism
312
Homo sapiens
Biosample type
209
tissue
102
primary cell
1
cell line
Organ
184
liver
24
pancreas
2
musculature of body
Project
312
AMP
134
HPAP
45
T1D
Genome assembly (visualization)
227
hg19
143
GRCh38
Lab
248
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
312 results
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total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
liver
163
20
islet of Langerhans
6
18
skeletal muscle tissue
1
1
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
cell line
HepG2
1
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