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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
100
ATAC-seq
3
Hi-C
1
MPRA
1
pCHi-C
Assay category
145
Transcription
100
DNA accessibility
DNA binding
3
3D chromatin structure
Date released
707
February, 2021
276
August, 2021
246
May, 2020
200
May, 2022
187
June, 2019
182
February, 2023
168
July, 2018
166
May, 2021
115
August, 2017
108
July, 2019
72
October, 2019
59
September, 2020
57
March, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
188
bam
188
bigWig
144
tsv
3
bedpe bed3+
3
cool
3
hic
1
txt
Organism
249
Homo sapiens
Biosample type
143
tissue
105
primary cell
2
cell line
Organ
144
liver
3
epithelium
3
pancreas
Project
247
AMP
T1D
3
HPAP
Genome assembly (visualization)
191
hg19
143
GRCh38
Lab
247
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
assay_slims!
DNA binding
award.project!
T1D
BIOSAMPLE
ASSAY
250 results
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Clear Filters
total RNA-seq
ATAC-seq
Hi-C
MPRA
pCHi-C
tissue
liver
143
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 27 more…
cell line
HepG2
1
MIN6
1
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