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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ATAC-seq
50
ChIP-seq
41
WGBS
22
snATAC-seq
1
pCHi-C
Assay category
Transcription
199
DNA accessibility
50
DNA binding
41
DNA methylation
Target of assay
27
histone
27
histone modification
27
narrow histone mark
23
control
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
152
February, 2021
151
May, 2020
140
May, 2022
139
August, 2021
120
May, 2019
111
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
113
bam
101
zippedFastqFolder
92
bigWig
65
bed narrowPeak
50
tagAlign
18
fastq
1
bed bed3+
1
tsv
1
txt
Organism
291
Homo sapiens
Biosample type
201
primary cell
89
tissue
1
cell line
Organ
98
pancreas
80
epithelium
71
liver
1
musculature of body
Project
190
AMP
101
HPAP
Genome assembly (visualization)
111
hg19
19
GRCh38
Lab
152
AMP-T2D consortium
101
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
BIOSAMPLE
ASSAY
291 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
snATAC-seq
pCHi-C
primary cell
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
Langerhans cell
21
+ See 27 more…
tissue
liver
20
50
islet of Langerhans
18
skeletal muscle tissue
1
cell line
HepG2
1
See all biosamples
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