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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
104
ATAC-seq
ChIP-seq
33
pCHi-C
10
Hi-C
Assay category
205
Transcription
104
DNA accessibility
10
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
250
bigWig
246
bam
234
tsv
12
bedpe bed3+
10
hic
2
ibed
Organism
352
Homo sapiens
Biosample type
181
tissue
148
primary cell
11
cell line
8
in vitro differentiated cells
4
stem cell
Organ
147
liver
11
pancreas
7
heart
5
epithelium
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
2
kidney
1
adipose tissue
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
303
AMP
49
T1D
Genome assembly (visualization)
262
hg19
201
GRCh38
Lab
307
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
24
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
352 results
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total RNA-seq
ATAC-seq
pCHi-C
Hi-C
tissue
liver
144
1
1
psoas muscle
2
1
2
islet of Langerhans
2
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
EndoC_BH1
2
2
early embryonic cell
2
HepG2
1
MCF-7
1
RCC 7860 VHL
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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