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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
total RNA-seq
79
ATAC-seq
37
ChIP-seq
Assay category
203
Transcription
79
DNA accessibility
37
DNA binding
Target of assay
35
histone
35
histone modification
28
narrow histone mark
7
broad histone mark
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
255
bam
243
bigWig
203
tsv
114
bed narrowPeak
64
xls
35
tagAlign
7
fastq
5
bed bed3+
5
bigBed narrowPeak
Organism
319
Homo sapiens
Biosample type
228
tissue
53
primary cell
30
in vitro differentiated cells
8
cell line
Organ
165
liver
64
kidney
8
embryo
8
epithelium
7
pancreas
Project
274
AMP
45
T1D
Genome assembly (visualization)
327
hg19
319
GRCh38
Lab
210
AMP-T2D consortium
64
Katalin Susztak, Upenn
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
tissue
liver
143
19
kidney
64
islet of Langerhans
2
primary cell
hepatocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 24 more…
in vitro differentiated cells
neural progenitor cell
7
10
13
cell line
H1-hESC
8
See all biosamples
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