Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
total RNA-seq
102
ATAC-seq
52
ChIP-seq
28
pCHi-C
10
Hi-C
Assay category
201
Transcription
102
DNA accessibility
52
DNA binding
10
3D chromatin structure
Target of assay
29
histone
29
histone modification
29
narrow histone mark
23
control
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
294
bam
273
bigWig
224
tsv
50
tagAlign
29
bed narrowPeak
12
bedpe bed3+
10
hic
2
ibed
Organism
393
Homo sapiens
Biosample type
233
tissue
148
primary cell
cell line
8
in vitro differentiated cells
4
stem cell
Organ
196
liver
9
pancreas
7
heart
5
musculature of body
4
blood vessel
4
vasculature
2
brain
2
connective tissue
2
intestine
1
adipose tissue
1
adrenal gland
1
epithelium
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spleen
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
344
AMP
49
T1D
Genome assembly (visualization)
285
hg19
218
GRCh38
Lab
348
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
393 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
tissue
liver
144
50
1
1
islet of Langerhans
2
2
2
psoas muscle
2
1
2
aorta
1
1
1
heart left ventricle
1
1
1
+ See 16 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
Download