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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
total RNA-seq
226
ChIP-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
232
Transcription
226
DNA binding
14
DNA methylation
5
DNA accessibility
Target of assay
151
histone modification
150
histone
77
narrow histone mark
73
broad histone mark
52
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
363
bam
348
bigWig
232
tsv
175
fastq
109
tagAlign
93
bed narrowPeak
26
bed bed3+
26
bed broadPeak
22
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
470
Homo sapiens
Biosample type
477
tissue
206
primary cell
68
in vitro differentiated cells
1
cell line
Organ
247
liver
147
pancreas
57
adipose tissue
57
connective tissue
26
musculature of body
Project
477
AMP
Genome assembly (visualization)
350
hg19
320
GRCh38
Lab
477
AMP-T2D consortium
Audit category:
22
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
477 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
143
98
3
1
islet of Langerhans
89
42
1
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
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