Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
30
ChIP-seq
7
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
100
DNA accessibility
30
DNA binding
7
DNA methylation
Target of assay
29
control
1
recombinant protein
1
transcription factor
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
370
bam
340
bigWig
189
tsv
bed narrowPeak
88
fastq
73
bigBed narrowPeak
50
tagAlign
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
329
Homo sapiens
Biosample type
175
tissue
148
primary cell
6
cell line
Organ
169
liver
5
spleen
4
pancreas
3
blood
3
bodily fluid
Project
284
AMP
45
T1D
Genome assembly (visualization)
233
hg19
195
GRCh38
Lab
284
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
329 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
liver
143
23
spleen
3
2
body of pancreas
2
pancreas
2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
GM12878
3
HepG2
1
1
1
See all biosamples
Download