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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ATAC-seq
65
ChIP-seq
2
total RNA-seq
Assay category
108
DNA accessibility
65
DNA binding
2
Transcription
Target of assay
39
histone
39
histone modification
29
narrow histone mark
26
control
10
broad histone mark
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
298
bam
274
bigWig
tsv
64
tagAlign
39
bed narrowPeak
17
fastq
6
bigBed narrowPeak
4
bed broadPeak
Organism
175
Homo sapiens
Biosample type
102
primary cell
73
tissue
Organ
50
liver
16
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
175
AMP
Genome assembly (visualization)
85
hg19
33
GRCh38
Lab
174
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
tsv
BIOSAMPLE
ASSAY
175 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 24 more…
tissue
liver
50
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
+ See 2 more…
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