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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
277
total RNA-seq
198
ChIP-seq
50
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
277
Transcription
198
DNA binding
55
DNA accessibility
2
DNA methylation
Target of assay
150
histone modification
149
histone
87
narrow histone mark
61
broad histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
1
control
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
565
bam
532
bigWig
287
fastq
278
tsv
169
bed narrowPeak
135
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
526
Homo sapiens
Biosample type
348
tissue
136
primary cell
48
in vitro differentiated cells
Organ
188
liver
159
pancreas
65
connective tissue
17
adipose tissue
17
epithelium
13
musculature of body
Project
487
AMP
45
T1D
Genome assembly (visualization)
530
hg19
454
GRCh38
Lab
487
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
532 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
liver
143
44
islet of Langerhans
89
27
1
1
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
B cell
2
2
+ See 25 more…
in vitro differentiated cells
adipocyte
47
1
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