Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
total RNA-seq
183
DNase-seq
96
ATAC-seq
59
ChIP-seq
1
pCHi-C
Assay category
279
DNA accessibility
186
Transcription
59
DNA binding
Target of assay
30
histone
30
histone modification
30
narrow histone mark
27
control
2
RNA binding protein
2
transcription factor
Date released
587
February, 2021
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
467
bam
440
bigWig
215
bed narrowPeak
188
bigBed narrowPeak
185
tsv
183
bed bed3+
183
bed broadPeak
183
bigBed broadPeak
50
tagAlign
Organism
525
Homo sapiens
Biosample type
355
tissue
169
primary cell
1
cell line
Organ
196
liver
77
kidney
34
musculature of body
31
limb
30
brain
30
heart
18
ureter
16
epithelium
7
eye
6
connective tissue
6
vasculature
5
blood vessel
4
pancreas
2
artery
1
adipose tissue
Project
484
AMP
41
T1D
Genome assembly (visualization)
417
hg19
391
GRCh38
Lab
484
AMP-T2D consortium
41
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
month_released!
August, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
525 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
brain
12
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 40 more…
cell line
HepG2
1
See all biosamples
Download