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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
DNase-seq
100
ATAC-seq
ChIP-seq
1
pCHi-C
Assay category
287
DNA accessibility
190
Transcription
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
420
bam
420
bigWig
189
tsv
187
bed bed3+
187
bed broadPeak
187
bed narrowPeak
187
bigBed broadPeak
187
bigBed narrowPeak
Organism
478
Homo sapiens
Biosample type
306
tissue
171
primary cell
1
cell line
Organ
146
liver
78
kidney
33
musculature of body
32
limb
30
brain
30
heart
18
ureter
14
epithelium
7
vasculature
6
connective tissue
5
blood vessel
4
eye
4
pancreas
2
artery
1
adipose tissue
Project
433
AMP
45
T1D
Genome assembly (visualization)
397
hg19
375
GRCh38
Lab
433
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
month_released!
November, 2018
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
478 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
pCHi-C
tissue
liver
143
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 44 more…
cell line
HepG2
1
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