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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
total RNA-seq
100
ATAC-seq
82
ChIP-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
217
Transcription
100
DNA accessibility
82
DNA binding
Target of assay
59
histone
59
histone modification
42
narrow histone mark
23
control
17
broad histone mark
Date released
715
February, 2021
399
May, 2021
369
August, 2017
341
May, 2020
319
August, 2021
244
October, 2019
205
February, 2023
200
May, 2022
168
July, 2018
106
July, 2019
94
November, 2017
64
March, 2020
61
November, 2019
59
September, 2018
59
September, 2020
49
April, 2018
47
September, 2023
44
December, 2017
40
May, 2024
39
February, 2018
31
October, 2018
25
February, 2020
23
May, 2019
19
April, 2020
17
October, 2017
16
April, 2019
16
January, 2021
15
May, 2023
November, 2018
15
November, 2020
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
355
bam
332
bigWig
215
tsv
73
bed narrowPeak
73
fastq
50
tagAlign
bigBed narrowPeak
1
csv
Organism
400
Homo sapiens
Biosample type
206
primary cell
193
tissue
1
cell line
Organ
194
liver
58
pancreas
47
epithelium
Project
355
AMP
45
T1D
Genome assembly (visualization)
318
hg19
265
GRCh38
Lab
355
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
32
missing controlled_by
month_released!
November, 2018
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
400 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
single cell RNA-seq
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
pancreatic ductal cell
4
13
macrophage
11
pancreatic endocrine cell
11
+ See 30 more…
tissue
liver
143
50
cell line
HepG2
1
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