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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
163
total RNA-seq
63
ChIP-seq
26
ATAC-seq
6
single cell RNA-seq
2
Hi-C
1
pCHi-C
Assay category
169
Transcription
63
DNA binding
26
DNA accessibility
2
3D chromatin structure
Target of assay
37
histone
37
histone modification
31
narrow histone mark
25
control
6
broad histone mark
1
RNA binding protein
1
transcription factor
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
258
bam
207
bigWig
170
tsv
64
bed narrowPeak
50
tagAlign
6
fastq
2
bedpe bed3+
2
hic
Organism
261
Homo sapiens
Biosample type
239
tissue
primary cell
17
cell line
5
in vitro differentiated cells
Organ
194
liver
61
pancreas
16
epithelium
1
adipose tissue
1
connective tissue
Project
261
AMP
Genome assembly (visualization)
235
hg19
225
GRCh38
Lab
261
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
biosample_type!
primary cell
BIOSAMPLE
ASSAY
261 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
liver
143
50
islet of Langerhans
19
19
6
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
13
1
1
HepG2
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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